To avoid having the Publish link be visible in the published page, use a link with no name like this: [|Publish].
Actually any pages linked within the <div class="org-ifcx-wikipublish-pages"> will get published. So you can list pages here, including using things like the Query plugin, and they'll get published. Note the JSPWiki syntax to begin a <div> with a particular class name is a line starting with %% followed by the class name. A %% with no class name ends the <div>.
Pages to Publish:
Blog
AboutIFCX
ProjectSummary
Publish
AJAX
AboutSemanticWeb
AboutThisSite
Adenine
AntAnywhere
AppletServer
BeyondJava
BlogRoll
BriefGUIHistory
CallToOpenUp
CodeAnalysis
CommercialSemWeb
Conferences
Continuations
DBin
DemoOOHTML
DigitalLibrary
DragAndDrop
EmbeddedRDF
EmbeddedRDFDemo
Folksonomies
FreeMusic
GUITesting
GWT
GeniusFolders
GoodTools
GridComputing
Grools
GroovyForOpenOffice
GroovyTools
HowGoogleWorks
IFCXWikiPublishing
Identity
JimWhite
JimWhite_blogentry_091208_1
JimWhite_blogentry_121208_1
JimWhite_blogentry_170606_3
JimWhite_blogentry_211207_1
JimWhite_blogentry_221208_1
JimWhite_blogentry_231113_1
JimWhite_blogentry_270606_1
JimWhite_blogentry_281206_1
LeftMenu
LiterateProgramming
LocalNetworking
MLISP
Maven
MultipleInheritance
Netflix
News
NewsArchive
News_blogentry_011107_1
News_blogentry_040707_1
News_blogentry_070706_1
News_blogentry_070706_2
News_blogentry_070706_3
News_blogentry_080607_1
News_blogentry_090607_1
News_blogentry_120508_1
News_blogentry_150908_1
News_blogentry_160706_1
News_blogentry_281206_1
OOHTML
RDF
RevisionControl
SPARQL
SWISS
SchemaMapping
SemanticDesktop
TREEMETA
UserInterface
WebPageScraping
WhyRDFIsSpecial
WikiEtiquette
WikiPublishing
Wings
If there are pages missing from the list (or if the referring pages part just says "nobody") then the index needs to be rebuilt. Delete /tmp/jim/IFCXWiki/refmgr.ser and restart JSPWiki. The path is configured by the jspwiki.workDir property in webapps/ifcx/WEB-INF/jspwiki.properties.